OligoFaktory is a web-based set of applications for the design, on an arbitrary number of target sequences (such as ORFs), of high-quality oligonucleotides for PCR and micro-array experiments. The plugin-based architecture allows to easily embed new modules: i.e. automated amplicons determination or design methods. The user-centered web interface conforms to state-of-the-art web- standards. An XHTML form is associated with each tool to fetch parameters from the user as input. A unified presentation of results provides overviews with distribution charts and relative location bar graphs, as well as detailed features for each oligonucleotide. Input and output files conform to a common XML interchange file format to allow both automatic generation of input data, archiving, and post-processing of results. We also describe a lightweight queu- ing system that distributes the resource intensive calcutations among multiple hosts.
Schretter, C, Gatto, L & Milinkovitch, MC 2005, OligoFaktory: A Web Portal for Interactive Oligonucleotide Design. in First BENELUX Bioinformatics Conference, Ghent, Belgium. First BENELUX Bioinformatics Conference, Ghent, Belgium, Unknown, 1/01/05.
Schretter, C., Gatto, L., & Milinkovitch, M. C. (2005). OligoFaktory: A Web Portal for Interactive Oligonucleotide Design. In First BENELUX Bioinformatics Conference, Ghent, Belgium (First BENELUX Bioinformatics Conference, Ghent, Belgium).
@inbook{fc00c006e3774666aacf4c55b166637f,
title = "OligoFaktory: A Web Portal for Interactive Oligonucleotide Design",
abstract = "OligoFaktory is a web-based set of applications for the design, on an arbitrary number of target sequences (such as ORFs), of high-quality oligonucleotides for PCR and micro-array experiments. The plugin-based architecture allows to easily embed new modules: i.e. automated amplicons determination or design methods. The user-centered web interface conforms to state-of-the-art web- standards. An XHTML form is associated with each tool to fetch parameters from the user as input. A unified presentation of results provides overviews with distribution charts and relative location bar graphs, as well as detailed features for each oligonucleotide. Input and output files conform to a common XML interchange file format to allow both automatic generation of input data, archiving, and post-processing of results. We also describe a lightweight queu- ing system that distributes the resource intensive calcutations among multiple hosts.",
keywords = "Bioinformatics",
author = "Colas Schretter and Laurent Gatto and Milinkovitch, {Michel C.}",
year = "2005",
language = "English",
series = "First BENELUX Bioinformatics Conference, Ghent, Belgium",
booktitle = "First BENELUX Bioinformatics Conference, Ghent, Belgium",
note = "Unknown ; Conference date: 01-01-2005",
}